Biophysics

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2006


Bartesaghi S, Ferrer-Sueta G, Peluffo G, Valez V, Zhang H, Kalyanaraman B, Radi R. Protein tyrosine nitration in hydrophilic and hydrophobic environments. Amino Acids 32:501-515 (2006).

Bartesaghi S, Valex V, Trujillo M, Peluffo G, Romero N, Zhang H, Kalyanaraman B, Radi R. Mechanistic studies of peroxynitrite-mediated tyrosine nitration in membranes using the hydrophobic probe N-t-BOC-L-tyrosine tert-butyl ester. Biochemistry 45:6813-6825 (2006).

Bennett KM, Hyde JS, Schmainda KM. Water diffusion heterogeneity index in the human brain is insensitive to the orientation of applied magnetic field gradients. Magn. Reson. Med. 56:235-239 (2006).

Bretscher LE, Morrell MT, Funk AF, Klug CS. Purification and characterization of the l-Ara4N transferase protein ArnT from Salmonella typhimurium. Protein Expr. Purif. 46:33-39 (2006).

Broniowska KA, Zhang y, Hogg N. Requirement of transmembrane transport for S-nitrosocysteine-dependent modification of intracellular thiols. J. Biol. Chem. 281:33835-33841 (2006).

Buchaklian AH, Klug CS. Characterization of the LSGGQ and H motifs from the Escherichia coli lipid A transporter MsbA. Biochemistry 45:12539-12546 (2006).

Chi L, Ke Y, Luo C, Li B, Gozal D, Kalyanaraman B, Liu R. Motor neuron degeneration promotes neural progenitor cell proliferation, migration, and neurogenesis in the spinal cords of amyotrophic lateral sclerosis mice. Stem Cells 24:34-43 (2006).

Choi DW, Do YS, Zea CJ, McEllistrem MT, Lee SW, Semrau JD, Pohl NL, Kisting CJ, Scardino LL, Hartsel SC, Boyd ES, Geesey GG, Riedel TP, Shafe PH, Kranski KA, Tritsch JR, Antholine WE, Dispirito AA. Spectral and thermodynamic properties of Ag(I), Au(III), Cd(II), Co(II), Fe(III), Hg(II), Mn(II), Ni(II), Pb(II), U(IV), and Zn(II) binding by methanobactin from Methylosinus trichosporium OB3b. J. Inorg. Biochem. 100:2150-2161 (2006).

Choi DW, Zea CJ, Do YS, Semrau JD, Antholine WE, Hargrove MS, Pohl NL, Boyd ES, Geesey GG, Hartsel SC, Shafe PH, McEllistrem MT, Kisting CJ, Campbell D, Rao V, de la Mora AM, Dispirito AA. Spectral, kinetic, and thermodynamic properties of Cu(I) and Cu(II) binding by methanobactin from Methylosinus trichosporium OB3b. Biochemistry 45:1442-1453 (2006).

Davis R, Bienvenue D, Swierczek SI, Gilner DM, Rajagopal L, Bennett B, Holz RC. Kinetic and spectroscopic characterization of the E134A- and E134D-altered dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae. J. Biol. Inorg. Chem. 11:206-216 (2006).

Gladwin MT, Raat H, Shiva S, Dezfulian C, Hogg N, Kim-Shapiro DB, Patel RP. Nitrite as a vascular endocrine nitric oxide reservoir that contributes to hypoxic signaling, cytoprotection and vasodilation. Am. J. Physiol. Heart Circ. Physiol. 291:H2026-H2035 (2006).

Gladwin MT, Wang X, Hogg N. Methodological vexation about thiol oxidation versus S nitrosation—a commentary on "An ascorbate-dependent artifact that interferes with the interpretation of the biotin-switch assay." Free Radic. Biol. Med. 41:557-561 (2006).

Hanson SM, Francis DJ, Vishnivetskiy SA, Kolobova EA, Hubbell WL, Klug CS, Gurevich VV. Differential interaction of spin-labeled arrestin with inactive and active phosphorhodopsin. Proc. Natl. Acad. Sci. USA 103:4900-4905 (2006).

Hanson SM, Francis DJ, Vishnivetskiy SA, Klug CS, Gurevich VV. Visual arrestin binding to microtubules involves a distinct conformational change. J. Biol. Chem. 281:9765-9772 (2006).

Huh J, Liepins A, Zielonka J, Andrekopoulos C, Kalyanaraman B, Sorokin A. Cyclooxygenase 2 rescues LNCaP prostate cancer cells from sanguinarine-induced apoptosis by a mechanism involving inhibition of nitric oxide synthase activity. Cancer Res. 66:3726-3736 (2006).

Hyde JS, Eaton GR, Eaton SS. EPR at work, in: Concepts in Magnetic Resonance Part A, Vol. 28A. Wiley: New York, 2006, pp. 1-100.

Keszler A, Mason RP, Hogg N. Immuno-spin trapping of hemoglobin and myoglobin radicals derived from nitrite-mediated oxidation. Free Radic. Biol. Med. 40:507-515 (2006).

Kotamraju S, Matalon S, Matsunaga T, Shang T, Hickman-Davis JM, Kalyanaraman B. Upregulation of immunoproteasomes by nitric oxide: Potential antioxidative mechanism in endothelial cells. Free Radic. Biol. Med. 40:1034-1044 (2006).

Liu H, Rainey C, Lauer KK, Piacentine L, Bloom A, Risinger R, Ward BD, Stein E, Li SJ. Peripheral blood pressure changes induced by dobutamine do not alter BOLD signals in the human brain. Neuroimage 30:745-752 (2006).

Lokken R, Strangeway R, Gassert J, Petersen O. Laboratory Manual to Accompany Contemporary Electric Circuits: Insights and Analysis, 2nd ed. Prentice-Hall: New Jersey, 2006.

Matthews ML, Periyannan G, Hajdin C, Sidgel TK, Bennett B, Crowder MW. Probing the reaction mechanism of the D-ala-D-ala dipeptidase, VanX, by using stopped-flow kinetic and rapid-freeze quench EPR studies on the Co(II)-substituted enzyme. J. Am. Chem. Soc. 128:13050-13051 (2006).

Mazaheri Y, Biswal B, Ward BD, Hyde JS. Measurements of tissue T(1) spin-lattice relaxation time and discrimination of large draining veins using transient EPI data sets in BOLD-weighted fMRI acquisitions. Neuroimage 32:603-615 (2006).

Nguyen TK, Nilakantan V, Felix CC, Khanna AK, Pieper GM. Beneficial effect of alpha-tocopheryl succinate in rat cardiac transplants. J. Heart Lung Transplant. 25:707-715 (2006).

Periyannan GR, Costello AL, Tierney DL, Yang K-W, Bennett B, Crowder MW. Sequential binding of cobalt(II) to metallo-beta-lactamase CcrA. Biochemistry 45:1313-1320 (2006).

Rowe DB, Hoffmann RG. Multivariate statistical analysis in fMRI. IEEE Eng. Med. Biol. 25:60-64 (2006).

Rowe DB, Nencka AS, Hoffmann RG. Signal and noise of Fourier reconstructed fMRI data. J. Neurosci. Methods 159:361-369 (2006).

Sato H, Feix JB. Osmoprotection of bacterial cells from toxicity caused by antimicrobial hybrid peptide CM15. Biochemistry 45:9997-10007 (2006).

Sato H, Feix JB. Peptide-membrane interactions and mechanisms of membrane destruction by amphipathic á-helical antimicrobial peptides. Biochim. Biophys. Acta 1758:1245-1256 (2006).

Sato H, Feix JB, Frank DW. Identification of superoxide dismutase as a cofactor for the pseudomonas type III toxin, ExoU. Biochemistry 45:10368-10375 (2006).

Schulte ML, Li S-J, Hyde JS, Hudetz AG. Digit tapping model of functional activation in the rat somatosensory cortex. J. Neurosci. Methods. 157:48-53 (2006).

Sharma NP, Hajdin C, Chandrasekar S, Bennett B, Yang KW, Crowder MW. Mechanistic studies on the mononuclear ZnII-containing metallo-beta-lactamase ImiS from Aeromonas sobria. Biochemistry 45:10729-10738 (2006).

Shiva S, Wang X, Ringwood LA, Xu X, Yuditskaya S, Annavajjhala V, Miyajima H, Hogg N, Harris ZL, Gladwin MT. Ceruloplasmin is a NO oxidase and nitrite synthase that determines endocrine NO homeostasis. Nat. Chem. Biol. 2:486-493 (2006).

Soltysik DA, Hyde JS. Strategies for block-design fMRI experiments during task-related motion of structures of the oral cavity. Neuroimage 29:1260-1271 (2006).

Strangeway R, Petersen O, Gassert J, Lokken R. Contemporary Electric Circuits: Insights and Analysis, 2nd ed. Prentice-Hall: New Jersey, 2006.

Subczynski WK, Wisniewska AM, Hyde JS, Kusumi A. Three-dimensional dynamic structure of the liquid-ordered domain in lipid membranes as examined by pulse-EPR oxygen probing. Biophys. J. 92:1573-1584 (2006).

Ward BD, Mazaheri Y. State-space estimation of the input stimulus function using the Kalman filter: A communication system model for fMRI experiments. J. Neurosci. Methods 158:271-278 (2006).

Whitsett J, Martasek P, Zhao H, Schauer DW, Hatakeyama K, Kalyanaraman B, Vasquez-Vivar J. Endothelial cell superoxide anion radical generation is not dependent on endothelial nitric oxide synthase-serine 1179 phosphorylation and endothelial nitric oxide synthase dimer/monomer distribution. Free Radic. Biol. Med. 40:2056-2068 (2006).

Wisniewska A, Subczynski WK. Accumulation of macular xanthophylls in unsaturated membrane domains. Free Radic. Biol. Med. 40:1820-1826 (2006).

Wisniewska A, Subczynski WK. Distribution of macular xanthophylls between domains in a model of photoreceptor outer segment membranes. Free Radic. Biol. Med. 41:1257-1565 (2006).

Wisniewska A, Widomska J, Subczynski WK. Carotenoid-membrane interactions in liposomes: Effect of dipolar, monopolar, and nonpolar carotenoids. Acta Biochim. Pol. 53:475-484 (2006).

Wu N, Hanson SM, Francis DJ, Vishnivetskiy SA, Thibonnier M, Klug CS, Shoham M, Gurevich VV. Arrestin binding to calmodulin: A direct interaction between two ubiquitous signaling proteins. J. Mol. Biol. 364:955-963 (2006).

Xu G, Xu Y, Wu G, Antuono PG, Hammeke TA, Li SJ. Task-modulation of functional synchrony between spontaneous low-frequency oscillations in the human brain detected by fMRI. Magn. Reson. Med. 56:41-50 (2006).

Zhang Y, Hogg N. S-Nitrosation of cysteine thiols as a redox signal, in: Redox Proteomics, Dalle-Donne I, Scaloni A, Butterfield DA, eds. Wiley: Hoboken, New Jersey, 2006, pp. 169-188.

Zhu X, Zhang R, Campagna NF, Zhao M. Assessment of reperfused myocardial infarction in the hyper-acute phase with delayed enhancement magnetic resonance imaging. J. Cardiovasc. Magn. Reson. 8:461-467 (2006).

Zielonka J, Sarna T, Roberts JE, Wishart JF, Kalyanaraman B. Pulse radiolysis and steady-state analyses of the reaction between hydroethidine and superoxide and other oxidants. Arch Biochem. Biophys. 456:39-47 (2006).

Zielonka J, Vasquez-Vivar J, Kalyanaraman B. The confounding effects of light, sonication, and Mn(III)TBAP on quantitation of superoxide using hydroethidine. Free Radic. Biol. Med. 41:1050-1057 (2006).

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