Biophysics

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2008


Bartesaghi S, Peluffo G, Zhang H, Joseph J, Kalyanaraman B, Radi R. Tyrosine nitration, dimerization, and hydroxylation by peroxynitrite in membranes as studied by the hydrophobic probe N-t-BOC-l-tyrosine tert-butyl ester. Methods Enzymol. 441:217-236 (2008).

Basu S, Azarova NA, Font MD, King SB, Hogg N, Gladwin MT, Shiva S, Kim-Shapiro DB. Nitrite reductase activity of cytochrome c. J. Biol. Chem. 283:32590-32597 (2008).

Borthiry GR, Antholine WE, Myers JM, Myers CR. Addition of DNA to Cr(VI) and cytochrome b5 containing proteoliposomes leads to generation of DNA strand breaks and Cr(III) complexes. Chem. Biodivers. 5:1545-1557 (2008).

Borthiry GR, Antholine WE, Myers JM, Myers CR. Reductive activation of hexavalent chromium by human lung epithelial cells: Generation of Cr(V) and Cr(V)-thiol species. J. Inorg. Biochem. 102:1449-1462 (2008).

Choi DW, Semrau JD, Antholine WE, Hartsel SC, Anderson RC, Carey JN, Dreis AM, Kenseth EM, Renstrom JM, Scardino LL, Van Gorden GS, Volkert AA, Wingad AD, Yanzer PJ, McEllistrem MT, de la Mora AM, DiSpirito AA. Oxidase, superoxide dismutase, and hydrogen peroxide reductase activities of methanobactin from types I and II methanotrophs. J. Inorg. Biochem. 102:1571-1580 (2008).

Frei AC, Guo Y, Jones DW, Pritchard KA Jr, Fagan KA, Hogg N, Wandersee NJ. Vascular dysfunction in a murine model of severe hemolysis. Blood 112:398-405 (2008).

Froncisz W, Camenisch TG, Ratke JJ, Anderson JR, Subczynski WK, Strangeway RA, Sidabras JW, Hyde JS. Saturation recovery EPR and ELDOR at W-band for spin labels. J. Magn. Reson. 193:297-304 (2008).

Hanson SM, Dawson ES, Francis DJ, Van Eps N, Klug CS, Hubbell WL, Meiler J, Gurevich VV. A model for the solution structure of the rod arrestin tetramer. Structure 16:924-934 (2008).

Keszler A, Piknova B, Schechter AN, Hogg N. The reaction between nitrite and oxyhemoglobin: A mechanistic study. J. Biol. Chem. 283:9615-9622 (2008).

Kettenhofen NJ, Wang X, Gladwin MT, Hogg N. In-gel detection of S-nitrosated proteins using fluorescence methods. Methods Enzymol. 441:53-71 (2008).

Klug CS, Feix JB. Methods and applications of site-directed spin labeling EPR spectroscopy. Methods Cell. Biol. 84:617-658 (2008).

Kolesar JM, Schelman WR, Geiger PG, Holen KD, Traynor AM, Alberti DB, Thomas JP, Chitambar CR, Wilding G, Antholine WE. Electron paramagnetic resonance study of peripheral blood mononuclear cells from patients with refractory solid tumors treated with Triapine. J. Inorg. Biochem. 102:693-698 (2008).

Logan BR, Geliazkova MP, Rowe DB. An evaluation of spatial thresholding techniques in fMRI analysis. Hum. Brain Mapp. 29:1379-1389 (2008).

Myers JM, Antholine WE, Myers CR. Hexavalent chromium causes the oxidation of thioredoxin in human bronchial epithelial cells. Toxicology 246:222-233 (2008).

Migrino RQ, Aggarwal D, Konorev E, Brahmbhatt T, Bright M, Kalyanaraman B. Early detection of doxorubicin cardiomyopathy using two-dimensional strain echocardiography. Ultrasound Med. Biol. 34:208-214 (2008).

Pathak AP, Ward BD, Schmainda KM. A novel technique for modeling susceptibility-based contrast mechanisms for arbitrary microvascular geometries: The finite perturber method. Neuroimage 40:1130-1143 (2008).

Pawela CP, Biswal BB, Cho YR, Kao DS, Li R, Jones SR, Schulte ML, Matloub HS, Hudetz AG, Hyde JS. Resting-state functional connectivity of the rat brain. Magn. Reson. Med. 59:1021-1029 (2008).

Pawela CP, Hudetz AG, Ward BD, Schulte ML, Li R, Kao DS, Mauck MC, Cho YR, Neitz J, Hyde JS. Modeling of region-specific fMRI BOLD neurovascular response functions in rat brain reveals residual differences that correlate with the differences in regional evoked potentials. Neuroimage 41:525-534 (2008).

Soltysik DA, Hyde JS. High spatial resolution increases the specificity of block-design BOLD fMRI studies of overt vowel production. Neuroimage 41:389-397 (2008).

Vásquez-Vivar J, Whitsett J, Ionova I, Konorev E, Zielonka J, Kalyanaraman B, Shi Y, Pieper GM. Cytokines and lipopolysaccharides induce inducible nitric oxide synthase but not enzyme activity in adult rat cardiomyocytes. Free Radic. Biol. Med. 45:994-1001 (2008).

Wang X, Kettenhofen NJ, Shiva S, Hogg N, Gladwin MT. Copper dependence of the biotin switch assay: Modified assay for measuring cellular and blood nitrosated proteins. Free Radic. Biol. Med. 44:1362-1372 (2008).

Ward BD, Mazaheri Y. Information transfer rate in fMRI experiments measured using mutual information theory. J. Neurosci. Methods. 167:22-30 (2008).

Widomska J, Subczynski WK. Transmembrane localization of cis-isomers of zeaxanthin in the host dimyristoylphosphatidylcholine bilayer membrane. Biochim. Biophys. Acta. 1778:10-19 (2008).

Xu Y, Xu G, Wu G, Antuono P, Rowe DB, Li S-J. The phase shift index for marking abnormal functional asynchrony in Alzheimer's patients by fMRI. Magn. Reson. Imaging 26:379-392 (2008).

Zhang H, Xu Y, Joseph J, Kalyanaraman B. Influence of intramolecular electron transfer mechanism in biological nitration, nitrosation, and oxidation of redox-sensitive amino acids. Methods Enzymol. 440:65-94 (2008).

Zhang H, Zielonka J, Sikora A, Joseph J, Xu Y, Kalyanaraman B. The effect of neighboring methionine residue on tyrosine nitration and oxidation in peptides treated with MPO, H(2)O(2), and NO(2)(-) or peroxynitrite and bicarbonate: Role of intramolecular electron transfer mechanism? Arch. Biochem. Biophys. 484:134-145 (2008).

Zielonka J, Srinivasan S, Hardy M, Ouari O, Lopez M, Vasquez-Vivar J, Avadhani NG, Kalyanaraman B. Cytochrome c-mediated oxidation of hydroethidine and mito-hydroethidine in mitochondria: identification of homo- and heterodimers. Free Radic. Biol. Med. 44:835-846 (2008).

Zielonka J, Vasquez-Vivar J, Kalyanaraman B. Detection of 2-hydroxyethidium in cellular systems: a unique marker product of superoxide and hydroethidine. Nat Protoc. 2008;3(1):8-21. Abstract Zielonda J, Kalyanaraman B. ROS-generating mitochondrial DNA mutations can regulate tumor cell metastasis: A critical commentary. Free Radic. Biol. Med. 45:1217-1219 (2008).

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