Biophysics

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2012


Babaei A, Ward BD, Ahmad S, Patel A, Nencka A, Li SJ, Hyde J, Shaker R.  Reproducibility of swallow-induced cortical BOLD positive and negative fMRI activity.  Am J Physiol Gastrointest Liver Physiol. 2012 Sep 1;303(5):G600-9. doi: 10.1152/ajpgi.00167.2012. Epub 2012 Jul 5.

Bansal S, Srinivasan S, Anandasadagopan S, Roy Chowdhury A, Selvaraj V, Kalyanaraman B, Joseph J, Avadhani NG. Additive Effects of Mitochondrion-targeted Cytochrome CYP2E1 and Alcohol Toxicity on Cytochrome c Oxidase Function and Stability of Respirasome Complexes. J Biol Chem. 2012 May 4;287(19):15284-97. Epub 2012 Mar 6.

Boxerman JL, Prah DE, Paulson ES, Machan JT, Bedekar D, Schmainda KM. The Role of Preload and Leakage Correction in Gadolinium-Based Cerebral Blood Volume Estimation Determined by Comparison with MION as a Criterion Standard. AJNR Am J Neuroradiol. 2012 Jun;33(6):1081-7. Epub 2012 Feb 9..

Broniowska KA, Hogg N. The chemical biology of S-nitrosothiols.  Antioxid Redox Signal. 2012 Oct 1;17(7):969-80.  Review.  PMID:22468855

Broniowska KA, Keszler A, Basu S, Kim-Shapiro DB, Hogg N. Cytochrome c-mediated formation of S-nitrosothiol in cells. Biochem J. 2012 Feb 15;442(1):191-7.

Chen G, Chen G, Xie C, Ward BD, Li W, Antuono P, Li SJ.  A method to determine the necessity for global signal regression in resting-state fMRI studies.  Magn Reson Med. 2012 Dec;68(6):1828-35. doi: 10.1002/mrm.24201. Epub 2012 Feb 14.

Chen G, Ward BD, Xie C, Li W, Chen G, Goveas JS, Antuono PG, Li SJ.  A clustering-based method to detect functional connectivity differences.  Neuroimage. 2012 May 15;61(1):56-61. Epub 2012 Mar 3.

Cheng G, Zielonka J, Dranka BP, McAllister D, Mackinnon AC Jr, Joseph J, Kalyanaraman B. Mitochondria-targeted drugs synergize with 2-deoxyglucose to trigger breast cancer cell death.  Cancer Res. 2012 May 15;72(10):2634-44. Epub 2012 Mar 19.

Chitambar CR, Antholine WE.  Iron-Targeting Antitumor Activity of Gallium Compounds and Novel Insights Into Triapine(®)-Metal Complexes. Antioxid Redox Signal. 2012 Oct 3. [Epub ahead of print]

Cunniff B, Benson K, Stumpff J, Newick K, Held P, Taatjes D, Joseph J, Kalyanaraman B, Heintz NH.  Mitochondrial-targeted nitroxides disrupt mitochondrial architecture and inhibit expression of peroxiredoxin 3 and FOXM1 in malignant mesothelioma cells.  J Cell Physiol. 2012 Sep 27. doi: 10.1002/jcp.24232. [Epub ahead of print]

Diers AR, Broniowska KA, Chang CF, Hogg N. Pyruvate fuels mitochondrial respiration and proliferation of breast cancer cells: effect of monocarboxylate transporter inhibition. Biochem J. 2012 Jun 15;444(3):561-71. PMID:22458763

Drobyshevsky A, Luo K, Derrick M, Yu L, Du H, Prasad PV, Vasquez-Vivar J, Batinic-Haberle I, Tan S. Motor deficits are triggered by reperfusion-reoxygenation injury as diagnosed by MRI and by a mechanism involving oxidants.  J Neurosci. (2012) Apr 18;32(16):5500-9.   PMC3332550

Francis, D.J., Hubbell, W.L., Klug, C.S.  (in press) Probing Protein Secondary Structure using EPR:  Investigating a Dynamic Region of Visual Arrestin. Appl. Magn. Reson.

Gadicherla AK, Stowe DF, Antholine WE, Yang M, Camara AK. Damage to mitochondrial complex I during cardiac ischemia reperfusion injury is reduced indirectly by anti-anginal drug ranolazine. Biochim Biophys Acta. 2012 Mar;1817(3):419-29. Epub 2011 Dec 8.

Ghosh A, Kanthasamy A, Joseph J, Anantharam V, Srivastava P, Dranka BP, Kalyanaraman B, Kanthasamy AG.  Anti-inflammatory and neuroprotective effects of an orally active apocynin derivative in pre-clinical models of Parkinson's disease.  J Neuroinflammation. 2012 Oct 23;9:241. doi: 10.1186/1742-2094-9-241.

Hahn AD, Nencka AS, Rowe DB. Enhancing the utility of complex-valued functional magnetic resonance imaging detection of neurobiological processes through postacquisition estimation and correction of dynamic B(0) errors and motion. Hum Brain Mapp. 2012 Feb;33(2):288-306. doi: 10.1002/hbm.21217. Epub 2011 Feb 8.

Kalyanaraman B, Darley-Usmar V, Davies KJ, Dennery PA, Forman HJ, Grisham MB, Mann GE, Moore K, Roberts LJ 2nd, Ischiropoulos H. Measuring reactive oxygen and nitrogen species with fluorescent probes: challenges and limitations. Free Radic Biol Med. 2012 Jan 1;52(1):1-6. Epub 2011 Oct 2.

Li W, Antuono PG, Xie C, Chen G, Jones JL, Ward BD, Franczak MB, Goveas JS, Li SJ.  Changes in regional cerebral blood flow and functional connectivity in the cholinergic pathway associated with cognitive performance in subjects with mild Alzheimer's disease after 12-week donepezil treatment. Neuroimage. 2012 Apr 2;60(2):1083-91..

Liu X, Lauer KK, Ward BD, Rao SM, Li SJ, Hudetz AG.  Propofol disrupts functional interactions between sensory and high-order processing of auditory verbal memory.  Hum Brain Mapp. 2012 Oct;33(10):2487-98. doi: 10.1002/hbm.21385. Epub 2011 Sep 20.

Liu X, Li R, Yang Z, Hudetz AG, Li SJ.  Differential effect of isoflurane, medetomidine, and urethane on BOLD responses to acute levo-tetrahydropalmatine in the rat.  Magn Reson Med. 2012 Aug;68(2):552-9. doi: 10.1002/mrm.23243. Epub 2011 Dec 28.

Liu X, Yang Z, Li R, Xie J, Yin Q, Bloom AS, Li SJ.  Responses of dopaminergic, serotonergic and noradrenergic networks to acute levo-tetrahydropalmatine administration in naïve rats detected at 9.4 T.  Magn Reson Imaging. 2012 Feb;30(2):261-70. Epub 2011 Nov 12

Mainali L, Raguz M, O'Brien WJ, Subczynski WK. Properties of fiber cell plasma membranes isolated from the cortex and nucleus of the porcine eye lens. Exp Eye Res. 2012 Apr;97(1):117-29. Epub 2012 Feb 2..

Mainali L, Raguz M, Subczynski WK. Phases and domains in sphingomyelin-cholesterol membranes: structure and properties using EPR spin-labeling methods. Eur Biophys J. 2012 Feb;41(2):147-59. Epub 2011 Oct 28.

Mao M, Sudhahar V, Ansenberger-Fricano K, Fernandes DC, Tanaka LY, Fukai T, Laurindo FR, Mason RP, Vasquez-Vivar J, Minshall RD, Stadler K, Bonini MG. Nitroglycerin drives endothelial nitric oxide synthase activation via the phosphatidylinositol 3-kinase/protein kinase B pathway. Free Radic Biol Med. 2012 Jan 15;52(2):427-35. Epub 2011 Oct 7.

Merten JA, Schultz KM, Klug CS. Concentration-dependent oligomerization and oligomeric arrangement of LptA. Protein Sci. 2012 Feb;21(2):211-8. doi: 10.1002/pro.2004. Epub 2011 Dec 21.

Michalski R, Zielonka J, Hardy M, Joseph J, Kalyanaraman B.  Hydropropidine: A novel, cell-impermeant fluorogenic probe for detecting extracellular superoxide.  Free Radic Biol Med. 2012 Oct 7. doi:pii: S0891-5849(12)01143-4. 10.1016/j.freeradbiomed.2012.09.018. [Epub ahead of print]

Mukhopadhyay P, Horváth B, Zsengellér Z, Zielonka J, Tanchian G, Holovac E, Kechrid M, Patel V, Stillman IE, Parikh SM, Joseph J, Kalyanaraman B, Pacher P.  Mitochondrial-targeted antioxidants represent a promising approach for prevention of cisplatin-induced nephropathy. Free Radic Biol Med. 2012 Jan 15;52(2):497-506. Epub 2011 Nov 10.

Plesnar E, Subczynski WK, Pasenkiewicz-Gierula M. Saturation with cholesterol increases vertical order and smoothes the surface of the phosphatidylcholine bilayer: A molecular simulation study. Biochim Biophys Acta. 2012 Mar;1818(3):520-9. Epub 2011 Oct 29.

Ramasamy S, Kundu TK, Antholine W, Manoharan PT, Rifkind JM.  Internal Spin Trapping of Thiyl Radical during the Complexation and Reduction of Cobalamin with Glutathione and Dithiothreitol.  J Porphyr Phthalocyanines. 2012 Jan 1;16(1):25-38.

Sethumadhavan S, Vasquez-Vivar J, Migrino RQ, Harmann L, Jacob HJ, Lazar J. Mitochondrial DNA variant for complex I reveals a role in diabetic cardiac remodeling. J Biol Chem. (2012) Jun 22;287(26):22174-82.  PMC3381178

Soberanes S, Gonzalez A, Urich D, Chiarella SE, Radigan KA, Osornio-Vargas A, Joseph J, Kalyanaraman B, Ridge KM, Chandel NS, Mutlu GM, De Vizcaya-Ruiz A, Budinger GR.  Particulate matter Air Pollution induces hypermethylation of the p16 promoter Via a mitochondrial ROS-JNK-DNMT1 pathway. Sci Rep. 2012;2:275. Epub 2012 Feb 17.

Subczynski WK, Raguz M, Widomska J, Mainali L, Konovalov A. Functions of cholesterol and the cholesterol bilayer domain specific to the fiber-cell plasma membrane of the eye lens. J Membr Biol. 2012 Jan;245(1):51-68. Epub 2011 Dec 30.

 
Tejero J, Basu S, Helms C, Hogg N, King SB, Kim-Shapiro DB, Gladwin MT. Low NO concentration dependence of reductive nitrosylation reaction of hemoglobin. J Biol Chem. 2012 May 25;287(22):18262-74. Epub 2012 Apr 4. 
PMCID:
 
PMC3365727

Valez V, Cassina A, Batinic-Haberle I, Kalyanaraman B, Ferrer-Sueta G, Radi R.  Peroxynitrite formation in nitric oxide-exposed submitochondrial particles: Detection, oxidative damage and catalytic removal by Mn-porphyrins. Arch Biochem Biophys. 2012 Nov 8. doi:pii: S0003-9861(12)00380-3. 10.1016/j.abb.2012.10.012. [Epub ahead of print]

Wang J, Alexanian A, Ying R, Kizhakekuttu TJ, Dharmashankar K, Vasquez-Vivar J, Gutterman DD, Widlansky ME. Acute Exposure to Low Glucose Rapidly Induces Endothelial Dysfunction and Mitochondrial Oxidative Stress: Role for AMP Kinase. Arterioscler Thromb Vasc Biol. 2012 Mar;32(3):712-20. Epub 2011 Dec 29.

Xie C, Li W, Chen G, Douglas Ward B, Franczak MB, Jones JL, Antuono PG, Li SJ, Goveas JS. The co-existence of geriatric depression and amnestic mild cognitive impairment detrimentally affect gray matter volumes: voxel-based morphometry study.  Behav Brain Res. 2012 Dec 1;235(2):244-50. doi: 10.1016/j.bbr.2012.08.007. Epub 2012 Aug 14.

Xie C, Bai F, Yu H, Shi Y, Yuan Y, Chen G, Li W, Chen G, Zhang Z, Li SJ. Abnormal insula functional network is associated with episodic memory decline in amnestic mild cognitive impairment.  Neuroimage. 2012 Oct 15;63(1):320-7. doi: 10.1016/j.neuroimage.2012.06.062. Epub 2012 Jul 6.

Yin JJ, Fu PP, Lutterodt H, Zhou YT, Antholine WE, Wamer W.  Dual Role of Selected Antioxidants Found in Dietary Supplements: Crossover between Anti- and Pro-Oxidant Activities in the Presence of Copper. J Agric Food Chem. 2012 Mar 14;60(10):2554-61. Epub 2012 Feb 28..

Xie C, Goveas J, Wu Z, Li W, Chen G, Franczak M, Antuono PG, Jones JL, Zhang Z, Li SJ.  Neural basis of the association between depressive symptoms and memory deficits in nondemented subjects: resting-state fMRI study.Hum Brain Mapp. 2012 Jun;33(6):1352-63. doi: 10.1002/hbm.21291. Epub 2011 May 26.

Zielonka J, Zielonka M, Sikora A, Adamus J, Joseph J, Hardy M, Ouari O, Dranka BP, Kalyanaraman B.  Global Profiling of Reactive Oxygen and Nitrogen Species in Biological Systems: HIGH-THROUGHPUT REAL-TIME ANALYSES. J Biol Chem. 2012 Jan 27;287(5):2984-95. Epub 2011 Dec 4.

 

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