Biophysics

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2013

Anderson DM, Feix JB, Monroe AL, Peterson FC, Volkman BF, Haas AL, Frank DW. Identification of the major ubiquitin-binding domain of the Pseudomonas aeruginosa ExoU A2 phospholipase. J Biol Chem. (2013) 288(37):26741-26752. PMC3772220

Babaei A, Ward BD, Siwiec R, Ahmad S, Kern M, Nencka A, Li SJ, Shaker R.  Functional Connectivity of the Cortical Swallowing Network in Humans.  Neuroimage. 2013 Feb 13. doi:pii: S1053-8119(13)00084-0. 10.1016/j.neuroimage.2013.01.037. [Epub ahead of print] PMID:23416253 [PubMed - as supplied by publisher]

Broniowska KA, Diers AR, Hogg N.  S-nitrosoglutathione.  Biochim Biophys Acta. 2013 May;1830(5):3173-81. doi: 10.1016/j.bbagen.2013.02.004. Epub 2013 Feb 14.

Chen Q, Zhuo Y, Kim M, Hanson SM, Francis DJ, Vishnivetskiy SA, Altenbach C, Klug CS, Hubbell WL,Gurevich VV.  Self-association of arrestin family members. Handb Exp Pharmacol. (2014) 219:205-223 

Cheng G, Zielonka J, McAllister DM, Mackinnon AC Jr, Joseph J, Dwinell MB, Kalyanaraman B.  Mitochondria-targeted vitamin E analogs inhibit breast cancer cell energy metabolism and promote cell death. BMC Cancer. 2013 Jun 13;13:285. doi: 10.1186/1471-2407-13-285. PMID:23764021[PubMed - in process]

Chitambar CR, Antholine WE. Iron-targeting antitumor activity of gallium compounds and novel insights into triapine(®)-metal complexes. Antioxid Redox Signal. (2013) 18(8):956-972; PMC3557436

Cunniff B, Benson K, Stumpff J, Newick K, Held P, Taatjes D, Joseph J, Kalyanaraman B, Heintz NH.  Mitochondrial-targeted nitroxides disrupt mitochondrial architecture and inhibit expression of peroxiredoxin 3 and FOXM1 in malignant mesothelioma cells.J Cell Physiol. 2013 Apr;228(4):835-45. doi: 10.1002/jcp.24232. PMID:23018647

Dellisanti CD, Ghosh B, Hanson SM, Raspanti JM, Grant VA, Diarra GM, Schuh AM, Satyshur K, Klug CS, Czajkowski C.  Site-directed spin labeling reveals pentameric ligand-gated ion channel gating motions. PLoS Biol. 2013 Nov;11(11):e1001714. doi: 10.1371/journal.pbio.1001714. Epub 2013 Nov 19  PMC3833874

Dickey JS, Gonzalez Y, Aryal B, Mog S, Nakamura AJ, Redon CE, Baxa U, Rosen E, Cheng G, Zielonka J,Parekh P, Mason KP, Joseph J, Kalyanaraman B, Bonner W, Herman E, Shacter E, Rao VA. Mito-tempol and dexrazoxane exhibit cardioprotective and chemotherapeutic effects through specific protein oxidation and autophagy in a syngeneic breast tumor preclinical model. PLoS One. (2013) 8(8):e70575. doi: 10.1371/journal.pone.0070575. Print 2013. PMC3734284

Dilip A, Cheng G, Joseph J, Kunnimalaiyaan S, Kalyanaraman B, Kunnimalaiyaan M, Gamblin TC.  Mitochondria-targeted antioxidant and glycolysis inhibition: synergistic therapy in hepatocellular carcinoma.  Anticancer Drugs. 2013 Jul 18. [Epub ahead of print]

Dranka BP, Gifford A, Ghosh A, Zielonka J, Joseph J, Kanthasamy AG, Kalyanaraman B.  Diapocynin prevents early Parkinson's disease symptoms in the leucine-rich repeat kinase 2 (LRRK2(R1441G)) transgenic mouse. Neurosci Lett. 2013 Aug 9;549:57-62. doi: 10.1016/j.neulet.2013.05.034. Epub 2013 May 28. PMID:23721786[PubMed - in process]

Ghosh A, Kanthasamy A, Joseph J, Anantharam V, Srivastava P, Dranka BP, Kalyanaraman B, Kanthasamy AG.  Anti-inflammatory and neuroprotective effects of an orally active apocynin derivative in pre-clinical models of Parkinson's disease.J Neuroinflammation. 2012 Oct 23;9:241. doi: 10.1186/1742-2094-9-241. PMID:23092448

Hickok JR, Vasudevan D, Antholine WE, Thomas DD. Nitric oxide modifies global histone methylation by inhibiting Jumonji C domain-containing demethylases. J Biol Chem. (2013) 288(22):16004-16015;  PMC3668755

Jesmanowicz A, Nencka A, Hyde JS.  Direct radiofrequency phase control in MRI by digital waveform playback at the Larmor frequency.  Magn Reson Med. 2013 Mar 6. doi: 10.1002/mrm.24713. [Epub ahead of print]

Jin H, Kanthasamy A, Ghosh A, Anantharam V, Kalyanaraman B, Kanthasamy AG. Mitochondria-targeted antioxidants for treatment of Parkinson's disease: Preclinical and clinical outcomes.  Biochim Biophys Acta. (2013) pii: S0925-4439(13)00286-X. doi: 10.1016/j.bbadis.2013.09.007. [Epub ahead of print]

Kalyanaraman B. Teaching the basics of redox biology to medical and graduate students: Oxidants, antioxidants and disease mechanisms. Redox Biol. (2013) 1(1):244-257; PMC3757692

Kalyanaraman B, Dranka BP, Hardy M, Michalski R, Zielonka J.  HPLC-based monitoring of products formed from hydroethidine-based fluorogenic probes - The ultimate approach for intra- and extracellular superoxide detection.  Biochim Biophys Acta. 2013 May 10. doi:pii: S0304-4165(13)00204-3. 10.1016/j.bbagen.2013.05.008. [Epub ahead of print]PMID:23668959

Li R, Hettinger PC, Machol JA, Liu X, Stephenson JB, Pawela CP, Yan JG, Matloub HS, Hyde JS.  Cortical plasticity induced by different degrees of peripheral nerve injuries: a rat functional magnetic resonance imaging study under 9.4 Tesla.  J Brachial Plex Peripher Nerve Inj. 2013 May 9;8(1):4. doi: 10.1186/1749-7221-8-4.  PMID:23659705

Li R, Machol JA 4th, Liu X, Hettinger PC, Flugstad NA, Yan JG, Matloub HS, Hyde JS.  C7 nerve root sensory distribution in peripheral nerves: A BOLD fMRI investigation at 9.4T.  Muscle Nerve. 2013 Apr 5. doi: 10.1002/mus.23864. [Epub ahead of print] PMID:23558801

Mainali L, Hyde JS, Subczynski WK.  Using spin-label W-band EPR to study membrane fluidity profiles in samples of small volume.  J Magn Reson. 2013 Jan;226:35-44. doi: 10.1016/j.jmr.2012.11.001. Epub 2012 Nov 12.

Mainali L, Raguz M, O'Brien WJ, Subczynski WK.  Properties of membranes derived from the total lipids extracted from the human lens cortex and nucleus.  Biochim Biophys Acta. 2013 Jun;1828(6):1432-40. doi: 10.1016/j.bbamem.2013.02.006. Epub 2013 Feb 21.

Mainali L, Raguz M, Subczynski WK.  Formation of cholesterol bilayer domains precedes formation of cholesterol crystals in cholesterol/dimyristoylphosphatidylcholine membranes: EPR and DSC studies.  J Phys Chem B. (2013) 117(30):8994-9003; PMC3762674

Menden H, Tate E, Hogg N, Sampath V. LPS-mediated endothelial activation in pulmonary endothelial cells: role of Nox2-dependent IKK-β phosphorylation.  Am J Physiol Lung Cell Mol Physiol. 2013 Mar 15;304(6):L445-55. doi: 10.1152/ajplung.00261.2012. Epub 2013 Jan 18.

Michalski R, Michalowski B, Sikora A, Zielonka J, Kalyanaraman B. On the use of fluorescence lifetime imaging and dihydroethidium to detect superoxide in intact animals and ex vivo tissues: A reassessment.  Free Radic Biol Med. (2013). [Epub ahead of print]

Michalski R, Zielonka J, Hardy M, Joseph J, Kalyanaraman B.  Hydropropidine: a novel, cell-impermeant fluorogenic probe for detecting extracellular superoxide.  Free Radic Biol Med. 2013 Jan;54:135-47. doi: 10.1016/j.freeradbiomed.2012.09.018. Epub 2012 Oct 7.

Myers JM, Cheng Q, Antholine WE, Kalyanaraman B, Filipovska A, Arnér ES, Myers CR.  Redox activation of Fe(III)-thiosemicarbazones and Fe(III)-bleomycin by thioredoxin reductase: specificity of enzymatic redox centers and analysis of reactive species formation by ESR spin trapping.  Free Radic Biol Med. 2013 Feb 26;60C:183-194. doi: 10.1016/j.freeradbiomed.2013.02.016. [Epub ahead of print]

Plesnar E, Subczynski WK, Pasenkiewicz-Gierula M. Comparative computer simulation study of cholesterol in hydrated unary and binary lipid bilayers and in an anhydrous crystal. J Phys Chem B. (2013) 25;117(29):8758-69; PMC3767298

Rice AJ, Alvarez FJ, Schultz KM, Klug CS, Davidson AL, Pinkett HW.  EPR Spectroscopy of MolB2C2-A Reveals Mechanism of Transport for a Bacterial Type II Molybdate Importer.  J Biol Chem. 2013 Jul 19;288(29):21228-35. doi: 10.1074/jbc.M113.483495. Epub 2013 May 24. PMID:23709218

Schultz KM, Feix JB, Klug CS. Disruption of LptA oligomerization and affinity of the LptA-LptC interaction. Protein Sci. (2013) 22(11):1639-1645. PMC3831678

Shah G, Zhang G, Chen F, Cao Y, Kalyanaraman B, See WA. iNOS expression and NO production contribute to the direct effects of BCG on urothelial carcinoma cell biology. Urol Oncol. (2013) pii: S1078-1439(13)00254-8. doi: 10.1016/j.urolonc.2013.06.005. [Epub ahead of print]

Sikora A, Zielonka J, Adamus J, Dębski D, Dybala-Defratyka A, Michalowski B, Joseph J, Hartley RC, Murphy MP, Kalyanaraman B.  Reaction between peroxynitrite and triphenylphosphonium-substituted arylboronic acid isomers - Identification of diagnostic marker products and biological implications.  Chem Res Toxicol. 2013 Apr 23. [Epub ahead of print]

Srinivasan S, Spear J, Chandran K, Joseph J, Kalyanaraman B, Avadhani NG. Oxidative stress induced mitochondrial protein kinase A mediates cytochrome C oxidase dysfunction. PLoS One. (2013) 8(10):e77129. doi: 10.1371/journal.pone.0077129.PMC3795003

Stephenson JB 4th, Li R, Yan JG, Hyde J, Matloub H.  Transhemispheric cortical plasticity following contralateral C7 nerve transfer: a rat functional magnetic resonance imaging survival study.J Hand Surg Am. 2013 Mar;38(3):478-87. doi: 10.1016/j.jhsa.2012.12.018.  PMID:23428188 [PubMed - in process]

Valez V, Cassina A, Batinic-Haberle I, Kalyanaraman B, Ferrer-Sueta G, Radi R.  Peroxynitrite formation in nitric oxide-exposed submitochondrial particles: detection, oxidative damage and catalytic removal by Mn-porphyrins.  Arch Biochem Biophys. 2013 Jan 1;529(1):45-54. doi: 10.1016/j.abb.2012.10.012. Epub 2012 Nov 8.

Whitsett J, Rangel Filho A, Sethumadhavan S, Celinska J, Widlansky M, Vasquez-Vivar J. Human endothelial dihydrofolate reductase low activity limits vascular tetrahydrobiopterin recycling.  Free Radic Biol Med. (2013) Oct;63:143-50. PMC3748942

Yu L, Vásquez-Vivar J, Jiang R, Luo K, Derrick M, Tan S. Developmental Susceptibility of Neurons to Transient Tetrahydrobiopterin Insufficiency and Antenatal Hypoxia-Ischemia in Fetal Rabbits.  Free Radic Biol Med. (2013) pii: S0891-5849(13)01531-1. doi: 10.1016/j.freeradbiomed.2013.11.026. [Epub ahead of print]

Zielonka J, Joseph J, Sikora A, Kalyanaraman B.  Real-time monitoring of reactive oxygen and nitrogen species in a multiwell plate using the diagnostic marker products of specific probes.  Methods Enzymol. 2013;526:145-57. doi: 10.1016/B978-0-12-405883-5.00009-0. PMID:23791099[PubMed - in process]

Zielonka J, Lambeth JD, Kalyanaraman B. On the use of L-012, a luminol-based chemiluminescent probe, for detecting superoxide and identifying inhibitors of NADPH oxidase: a reevaluation. Free Radic Biol Med. (2013) 65:1310-1314. doi: 10.1016/j.freeradbiomed.2013.09.017. Epub 2013 Sep 27.

 

 

 

 

 

 

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Page Updated 12/17/2013