Biophysics

Publications of the Department of Biophysics, 2007

alphabetical by first author

Borthiry GR, Antholine WE, Kalyanaraman B, Myers JM, Myers CR. Reduction of hexavalent chromium by human cytochrome b5: generation of hydroxyl radical and superoxide.  Free Radic Biol Med. 2007 Mar 15;42(6):738-55; discussion 735-7. Epub 2006 Dec 15.
PMID: 17320757 [PubMed - indexed for MEDLINE] Abstract 

Grether DM, Plott CR, Rowe DB, Sereno MI, Allman JM.  For a few dollars more: An fMRI study of selling in auctions. Experimental Economics. 10(2):105-122, 2007. 

Grubina R, Huang Z, Shiva S, Joshi MS, Azarov I, Basu S, Ringwood LA, Jiang A, Hogg N, Kim-Shapiro DB, Gladwin MT. Concerted nitric oxide formation and release from the simultaneous reactions of nitrite with deoxy- and oxyhemoglobin. J Biol Chem. 2007 Apr 27;282(17):12916-27. Epub 2007 Feb 23. PMID: 17322300 [PubMed - indexed for MEDLINE] Abstract

Hardy M, Chalier F, Ouari O, Finet JP, Rockenbauer A, Kalyanaraman B, Tordo P.  Mito-DEPMPO synthesized from a novel NH2-reactive DEPMPO spin trap: a new and improved trap for the detection of superoxide. Chem Commun (Camb). 2007 Mar 14;(10):1083-5. Epub 2007 Jan 2. PMID: 17325813 [PubMed - indexed for MEDLINE] Abstract

Hardy M, Rockenbauer A, Vasquez-Vivar J, Felix C, Lopez M, Srinivasan S, Avadhani N, Tordo P, Kalyanaraman B. Detection, Characterization, and Decay Kinetics of ROS and Thiyl Adducts of Mito-DEPMPO Spin Trap. Chem Res Toxicol 2007 Jul;20(7):1053-60;  Abstract

Horowitz S, Binion DG, Nelson V, Kanaa Y, Javadi P, Lazarova Z, Andrekopoulos C, Kalyanaraman B, Otterson MF, Rafiee P.  Increased Arginase Activity And Endothelial Dysfunction In Human Inflammatory Bowel Disease.  Am J Physiol Gastrointest Liver Physiol. 2007 Jan 11; [Epub ahead of print]  Abstract

Hyde JS, Froncisz W, Sidabras JW, Camenisch TG, Anderson JR, Strangeway RA.  Microwave frequency modulation in CW EPR at W-band using a loop-gap resonator.
J Magn Reson. 2007 185:259-263 Abstract

Kalyanaraman B.  Iron signaling and oxidant damage.  Cardiovasc Toxicol. 2007;7(2):92-4.  Abstract

Kettenhofen NJ, Broniowska KA, Keszler A, Zhang Y, Hogg N. Proteomic methods for analysis of S-nitrosation.  J Chromatogr B Analyt Technol Biomed Life Sci. 2007 May 15;851(1-2):152-9. Epub 2007 Feb 25.  Abstract

Kotamraju S, Williams CL, Kalyanaraman B.  Statin-induced breast cancer cell death: role of inducible nitric oxide and arginase-dependent pathways.
Cancer Res. 2007 Aug 1;67(15):7386-94. Abstract

Kufahl PR, Rowe DB, Li S-J.  Processing of drug-induced BOLD responses with Bayesian source separation. Digital Signal Processing. 17(5):975-978, 2007. 

Kumar A, Periyannan GR, Narayanan B, Kittell AW, Kimm JJ, Bennett B.  Experimental evidence for a metallohydrolase mechanism in which the nucleophile is not delivered by a metal ion: EPR spectrokinetic and structural studies of aminopeptidase from Vibrio proteolyticus.  Biochem J. 2007 Jan 22; [Epub ahead of print] Abstract

Mett RR, Sidabras JW, Hyde JS.  Uniform radio frequency fields in loop-gap resonators for EPR spectroscopy.  Appl Magn Reson 31:571-587, 2007. 

Migrino RQ, Aggarwal D, Konorev E, Brahmbhatt T, Bright M, Kalyanaraman B.  Early Detection of Doxorubicin Cardiomyopathy Using Two-Dimensional Strain Echocardiography.  Ultrasound Med Biol. 2007 Oct 10; [Epub ahead of print]  Abstract 

Nencka AS, Rowe DB. Reducing the unwanted draining vein BOLD contribution in fMRI with statistical post-processing methods. Neuroimage. 37(1):177-188, 2007. Abstract

Pistolesi S, Pogni R, and Feix JB. Membrane Insertion and Bilayer Perturbation by Antimicrobial Peptide CM15D Biophys. J. ; 2007 Sep 1;93(5):1651-60. Abstract

Romero N, Peluffo G, Bartesaghi S, Zhang H, Joseph J, Kalyanaraman B, Radi R. Incorporation of the Hydrophobic Probe N-t-BOC-l-tyrosine tert-Butyl Ester to Red Blood Cell Membranes To Study Peroxynitrite-Dependent Reactions. Chem Res Toxicol. 2007 Nov 19;20(11):1638-1648. Epub 2007 Oct 18.  Abstract 

Rowe DB, Meller CP, Hoffmann RG. Characterizing phase-only fMRI data with an angular regression model. J Neurosci Method. 2007 Apr 15;161(2):331-41. Epub 2006 Dec 8.
PMID: 17157916 [PubMed - indexed for MEDLINE] Abstract

Rowe DB, Nencka AS, Hoffmann RG.  Signal and noise of Fourier reconstructed fMRI data. J. Neurosci. Methods,  159(2):361-369, 2007

Sidabras JW, Mett RR, Froncisz W, Camenisch TG, Anderson JR, Hyde JS.  Multipurpose loop-gap and cylindrical TE011 resonators for aqueous samples at 94 GHz.  REv Sci Instum 78:034709, 2007.  Abstract

Subczynski WK, Wisniewska A, Hyde JS, Kusumi A.  Three-Dimensional Dynamic Structure of the Liquid-Ordered Domain in Lipid Membranes as Examined by Pulse-EPR Oxygen Probing.
Biophys J. 2007 Mar 1;92(5):1573-84. Epub 2006 Dec 1.  Abstract

Thomas S, Kotamraju S, Zielonka J, Harder DR, Kalyanaraman B.  Hydrogen peroxide induces nitric oxide and proteosome activity in endothelial cells: a bell-shaped signaling response.Free Radic Biol Med . 2007 Apr 1;42(7):1049-61. Epub 2007 Jan 8.
PMID: 17349932 [PubMed - indexed for MEDLINE] Abstract

Whitsett J, Picklo MJ Sr, Vasquez-Vivar J.  4-Hydroxy-2-Nonenal Increases Superoxide Anion Radicalin Endothelial Cells via Stimulated GTP Cyclohydrolase Proteasomal Degradation.
Arterioscler Thromb Vasc Biol. 2007 Sep 13; [Epub ahead of print]
PMID: 17872449 [PubMed - as supplied by publisher] Abstract

Widomska J, Raguz M, Dillon J, Gaillard ER, Subczynski WK.  Physical properties of the lipid bilayer membrane made of calf lens lipids:  EPR spin labeling studies.  Biochim Biophys Acta 1768:1454-1465, 2007.  Abstract

Widomska J, Raguz M, Subczynski WK.  Oxygen permeability of the lipid bilayer membrane made of calf lens lipids. Biochim Biophys Acta. 2007 Jun 29; [Epub ahead of print] Abstract

Xu Y, Kalyanaraman B.  Synthesis and ESR studies of a novel cyclic nitrone spin trap attached to a phosphonium group-a suitable trap for mitochondria-generated ROS?
Free Radic Res. 2007 Jan;41(1):1-7. Abstract

Widomska J, Subczynski WK.  Transmembrane localization of cis-isomers of zeaxanthin in the host dimyristoylphosphatidylcholine bilayer membrane.  Biochim Biophys Acta (in press 2007) Abstract

Xu Y, Wu G,  Rowe DB, Ma Y, Zhang R, Xu G, Li S-J: COMBE: Complex Model Based Estimation of Thermal Noise for fMRI Data in the Presence of Artifacts. Magn. Reson. Imaging, 25(7):1079-1088, 2007.  Abstract

Zhu H, Ibrahim JG, Tang N, Rowe DB, Hau X, Bansal R, Peterson BS.  A statistical analysis of brain morphology using wild bootstrapping.
IEEE Trans Med Imaging. 2007 Jul;26(7):954-66.  Abstract