Pengyuan Liu, PhD

Publications

• Alternative polyadenylation: methods, mechanism, function, and role in cancer

  (Zhang Y, Liu L, Qiu Q, Zhou Q, Ding J, Lu Y, Liu P.) Journal of Experimental and Clinical Cancer Research. December 2021;40(1) SCOPUS ID: 2-s2.0-85100573587 12/01/2021

• An integrated epigenomic-transcriptomic landscape of lung cancer reveals novel methylation driver genes of diagnostic and therapeutic relevance

  (Sun X, Yi J, Yang J, Han Y, Qian X, Liu Y, Li J, Lu B, Zhang J, Pan X, Liu Y, Liang M, Chen E, Liu P, Lu Y.) Theranostics. 11 March 2021;11(11):5346-5364 SCOPUS ID: 2-s2.0-85102449346 03/11/2021

• A comprehensive evaluation of computational tools to identify differential methylation regions using RRBS data.

  (Liu Y, Han Y, Zhou L, Pan X, Sun X, Liu Y, Liang M, Qin J, Lu Y, Liu P.) Genomics. 2020 11;112(6):4567-4576 PMID: 32712292 SCOPUS ID: 2-s2.0-85089382545 07/28/2020

• tRNA-derived RNA fragments in cancer: current status and future perspectives.

  (Yu M, Lu B, Zhang J, Ding J, Liu P, Lu Y.) J Hematol Oncol. 2020 09 04;13(1):121 PMID: 32887641 PMCID: PMC7487644 SCOPUS ID: 2-s2.0-85090505373 09/06/2020

• p38γ MAPK Is Essential for Aerobic Glycolysis and Pancreatic Tumorigenesis.

  (Wang F, Qi XM, Wertz R, Mortensen M, Hagen C, Evans J, Sheinin Y, James M, Liu P, Tsai S, Thomas J, Mackinnon A, Dwinell M, Myers CR, Bartrons Bach R, Fu L, Chen G.) Cancer Res. 2020 08 15;80(16):3251-3264 PMID: 32580961 SCOPUS ID: 2-s2.0-85089787021 06/26/2020

• OncotRF: an online resource for exploration of tRNA-derived fragments in human cancers.

  (Yao D, Sun X, Zhou L, Amanullah M, Pan X, Liu Y, Liang M, Liu P, Lu Y.) RNA Biol. 2020 08;17(8):1081-1091 PMID: 32597311 PMCID: PMC7577240 SCOPUS ID: 2-s2.0-85087512616 07/01/2020

• MDEHT: a multivariate approach for detecting differential expression of microRNA isoform data in RNA-sequencing studies.

  (Amanullah M, Yu M, Sun X, Luo A, Zhou Q, Zhou L, Hou L, Wang W, Lu W, Liu P, Lu Y.) Bioinformatics. 2020 05 01;36(9):2657-2664 PMID: 31930386 PMCID: PMC7203753 SCOPUS ID: 2-s2.0-85084380046 01/14/2020

• Single-Cell Transcriptomic Analysis.

  (Zheng Z, Chen E, Lu W, Mouradian G, Hodges M, Liang M, Liu P, Lu Y.) Compr Physiol. 2020 03 12;10(2):767-783 PMID: 32163201 SCOPUS ID: 2-s2.0-85081944090 03/13/2020

• Comparative and Functional Genomic Resource for Mechanistic Studies of Human Blood Pressure-Associated Single Nucleotide Polymorphisms.

  (Mishra MK, Liang EY, Geurts AM, Auer PWL, Liu P, Rao S, Greene AS, Liang M, Liu Y.) Hypertension. 2020 03;75(3):859-868 PMID: 31902252 PMCID: PMC7035167 SCOPUS ID: 2-s2.0-85081142576 01/07/2020

• Epigenetic Modifications in T Cells: The Role of DNA Methylation in Salt-Sensitive Hypertension.

  (Dasinger JH, Alsheikh AJ, Abais-Battad JM, Pan X, Fehrenbach DJ, Lund H, Roberts ML, Cowley AW Jr, Kidambi S, Kotchen TA, Liu P, Liang M, Mattson DL.) Hypertension. 2020 02;75(2):372-382 PMID: 31838911 PMCID: PMC7058976 SCOPUS ID: 2-s2.0-85077761000 12/17/2019

• Diagnostic and clinical utility of whole genome sequencing in a cohort of undiagnosed Chinese families with rare diseases.

  (Liu HY, Zhou L, Zheng MY, Huang J, Wan S, Zhu A, Zhang M, Dong A, Hou L, Li J, Xu H, Lu B, Lu W, Liu P, Lu Y.) Sci Rep. 2019 12 18;9(1):19365 PMID: 31852928 PMCID: PMC6920370 SCOPUS ID: 2-s2.0-85076894153 12/20/2019

• Long noncoding RNA LCAT1 functions as a ceRNA to regulate RAC1 function by sponging miR-4715-5p in lung cancer.

  (Yang J, Qiu Q, Qian X, Yi J, Jiao Y, Yu M, Li X, Li J, Mi C, Zhang J, Lu B, Chen E, Liu P, Lu Y.) Mol Cancer. 2019 11 29;18(1):171 PMID: 31779616 PMCID: PMC6883523 SCOPUS ID: 2-s2.0-85075794753 11/30/2019