Chien-Wei (Masaki) Lin, PhD

Publications

• Comparative Pathway Integrator: A Framework of Meta-Analytic Integration of Multiple Transcriptomic Studies for Consensual and Differential Pathway Analysis.

  (Zeng X, Zong W, Lin CW, Fang Z, Ma T, Lewis DA, Enwright JF, Tseng GC.) Genes (Basel). 2020 Jun 24;11(6) PMID: 32599927 PMCID: PMC7348908 07/01/2020

• Novel KLHL26 variant associated with a familial case of Ebstein's anomaly and left ventricular noncompaction.

  (Samudrala SSK, North LM, Stamm KD, Earing MG, Frommelt MA, Willes R, Tripathi S, Dsouza NR, Zimmermann MT, Mahnke DK, Liang HL, Lund M, Lin CW, Geddes GC, Mitchell ME, Tomita-Mitchell A.) Mol Genet Genomic Med. 2020 Apr;8(4):e1152 PMID: 31985165 PMCID: PMC7196453 SCOPUS ID: 2-s2.0-85078673520 01/28/2020

• Mortalin (HSPA9) facilitates BRAF-mutant tumor cell survival by suppressing ANT3-mediated mitochondrial membrane permeability.

  (Wu PK, Hong SK, Chen W, Becker AE, Gundry RL, Lin CW, Shao H, Gestwicki JE, Park JI.) Sci Signal. 2020 Mar 10;13(622) PMID: 32156782 PMCID: PMC7099430 SCOPUS ID: 2-s2.0-85081677231 03/12/2020

• Black raspberries suppress pancreatic cancer through modulation of NKp46+, CD8+, and CD11b+ immune cells.

  (Pan P, Zhu Z, Oshima K, Aldakkak M, Tsai S, Huang YW, Dong W, Zhang J, Lin CW, Wang Y, Yearsley M, Yu J, Wang LS.) Food Front. 2020 Mar;1(1):70-82 PMID: 32368735 PMCID: PMC7197210 05/06/2020

• MethylSeqDesign: a framework for Methyl-Seq genome-wide power calculation and study design issues.

  (Liu P, Lin CW, Park Y, Tseng G.) Biostatistics. 2019 May 20 PMID: 31107532 05/21/2019

• MetaOmics: analysis pipeline and browser-based software suite for transcriptomic meta-analysis.

  (Ma T, Huo Z, Kuo A, Zhu L, Fang Z, Zeng X, Lin CW, Liu S, Wang L, Liu P, Rahman T, Chang LC, Kim S, Li J, Park Y, Song C, Oesterreich S, Sibille E, Tseng GC.) Bioinformatics. 2019 05 01;35(9):1597-1599 PMID: 30304367 PMCID: PMC6499246 10/12/2018

• DNA methylation in the human frontal cortex reveals a putative mechanism for age-by-disease interactions.

  (McKinney BC, Lin CW, Rahman T, Oh H, Lewis DA, Tseng G, Sibille E.) Transl Psychiatry. 2019 01 29;9(1):39 PMID: 30696804 PMCID: PMC6351569 01/31/2019

• Temporal and Spatial Post-Transcriptional Regulation of Zebrafish tie1 mRNA by Long Noncoding RNA During Brain Vascular Assembly.

  (Chowdhury TA, Koceja C, Eisa-Beygi S, Kleinstiver BP, Kumar SN, Lin CW, Li K, Prabhudesai S, Joung JK, Ramchandran R.) Arterioscler Thromb Vasc Biol. 2018 07;38(7):1562-1575 PMID: 29724820 PMCID: PMC6023729 05/05/2018

• RNASeqDesign: a framework for ribonucleic acid sequencing genomewide power calculation and study design issues

  (Chien-Wei Lin, Serena G. Liao, Peng Liu, Mei‐Ling Ting Lee, Yong Seok Park, George C. Tseng.) Journal of the Royal Statistical Society. Series C, Applied statistics. 12/09/2018

• Enhanced Molecular Aging in Late-Life Depression: the Senescent-Associated Secretory Phenotype.

  (Diniz BS, Reynolds CF 3rd, Sibille E, Lin CW, Tseng G, Lotrich F, Aizenstein HJ, Butters MA.) Am J Geriatr Psychiatry. 2017 01;25(1):64-72 PMID: 27856124 PMCID: PMC5164865 11/20/2016

• Circulating biosignatures of late-life depression (LLD): Towards a comprehensive, data-driven approach to understanding LLD pathophysiology.

  (Diniz BS, Lin CW, Sibille E, Tseng G, Lotrich F, Aizenstein HJ, Reynolds CF, Butters MA.) J Psychiatr Res. 2016 11;82:1-7 PMID: 27447786 07/23/2016

• Age-dependent increase in Kalirin-9 and Kalirin-12 transcripts in human orbitofrontal cortex.

  (Grubisha MJ, Lin CW, Tseng GC, Penzes P, Sibille E, Sweet RA.) Eur J Neurosci. 2016 10;44(7):2483-2492 PMID: 27471199 PMCID: PMC5048532 07/30/2016