Chien-Wei (Masaki) Lin, PhD

Publications

• MetaOmics: analysis pipeline and browser-based software suite for transcriptomic meta-analysis.

  (Ma T, Huo Z, Kuo A, Zhu L, Fang Z, Zeng X, Lin CW, Liu S, Wang L, Liu P, Rahman T, Chang LC, Kim S, Li J, Park Y, Song C, Oesterreich S, Sibille E, Tseng GC.) Bioinformatics. 2019 May 01;35(9):1597-1599 PMID: 30304367 PMCID: PMC6499246 10/12/2018

• DNA methylation in the human frontal cortex reveals a putative mechanism for age-by-disease interactions.

  (McKinney BC, Lin CW, Rahman T, Oh H, Lewis DA, Tseng G, Sibille E.) Transl Psychiatry. 2019 01 29;9(1):39 PMID: 30696804 PMCID: PMC6351569 01/31/2019

• Temporal and Spatial Post-Transcriptional Regulation of Zebrafish mRNA by Long Noncoding RNA During Brain Vascular Assembly.

  (Chowdhury TA, Koceja C, Eisa-Beygi S, Kleinstiver BP, Kumar SN, Lin CW, Li K, Prabhudesai S, Joung JK, Ramchandran R.) Arterioscler Thromb Vasc Biol. 2018 07;38(7):1562-1575 PMID: 29724820 PMCID: PMC6023729 05/05/2018

• Enhanced Molecular Aging in Late-Life Depression: the Senescent-Associated Secretory Phenotype.

  (Diniz BS, Reynolds CF 3rd, Sibille E, Lin CW, Tseng G, Lotrich F, Aizenstein HJ, Butters MA.) Am J Geriatr Psychiatry. 2017 01;25(1):64-72 PMID: 27856124 PMCID: PMC5164865 11/20/2016

• Circulating biosignatures of late-life depression (LLD): Towards a comprehensive, data-driven approach to understanding LLD pathophysiology.

  (Diniz BS, Lin CW, Sibille E, Tseng G, Lotrich F, Aizenstein HJ, Reynolds CF, Butters MA.) J Psychiatr Res. 2016 11;82:1-7 PMID: 27447786 07/23/2016

• Age-dependent increase in Kalirin-9 and Kalirin-12 transcripts in human orbitofrontal cortex.

  (Grubisha MJ, Lin CW, Tseng GC, Penzes P, Sibille E, Sweet RA.) Eur J Neurosci. 2016 10;44(7):2483-2492 PMID: 27471199 PMCID: PMC5048532 07/30/2016

• Predisposition to treatment response in major depressive episode: A peripheral blood gene coexpression network analysis.

  (Belzeaux R, Lin CW, Ding Y, Bergon A, Ibrahim EC, Turecki G, Tseng G, Sibille E.) J Psychiatr Res. 2016 10;81:119-26 PMID: 27438688 07/21/2016

• MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis.

  (Kim S, Lin CW, Tseng GC.) Bioinformatics. 2016 07 01;32(13):1966-73 PMID: 27153719 PMCID: PMC6280887 05/07/2016

• SMART: Statistical Metabolomics Analysis-An R Tool.

  (Liang YJ, Lin YT, Chen CW, Lin CW, Chao KM, Pan WH, Yang HC.) Anal Chem. 2016 06 21;88(12):6334-41 PMID: 27248514 06/02/2016

• FRAS1-related extracellular matrix 3 (FREM3) single-nucleotide polymorphism effects on gene expression, amygdala reactivity and perceptual processing speed: An accelerated aging pathway of depression risk.

  (Nikolova YS, Iruku SP, Lin CW, Conley ED, Puralewski R, French B, Hariri AR, Sibille E.) Front Psychol. 2015;6:1377 PMID: 26441752 PMCID: PMC4584966 10/07/2015

• MethylSeqDesign: a framework for Methyl-Seq genome-wide power calculation and study design issues.

  (Liu P, Lin CW, Park Y, Tseng G.) Biostatistics. 2019 May 20 PMID: 31107532 05/21/2019

• RNASeqDesign: a framework for ribonucleic acid sequencing genomewide power calculation and study design issues

  (Chien-Wei Lin, Serena G. Liao, Peng Liu, Mei‐Ling Ting Lee, Yong Seok Park, George C. Tseng.) Journal of the Royal Statistical Society. Series C, Applied statistics. 12/09/2018