Genomics, Genetics and Epigenetics Laboratory

Research Areas
Genetic studies of Human Ocular Disorders
Ocular development is a complex process requiring carefully orchestrated differentiation of cells. Study of the genetic causes of pediatric/early onset conditions provides important insight into the mechanisms of normal development and disease. For affected families, identification of a genetic cause provides more accurate diagnosis and medical management.
Developmental Genomics Program
Many genes important in early development are active in many parts of the body. Disruption of one of these genes can cause multiple congenital anomaly (MCA) syndromes. The current diagnosis rate for exome sequencing in MCA syndromes varies from 15-50% in different settings, indicating that additional causes remain to be identified. Through analysis of samples from affected families as well as work in zebrafish and iPSC cell lines, we aim to expand understanding of known developmental genes and identify new genes important in early development.
Meet Our Team

Elena Semina, PhD
Marjorie and Joseph Heil Professor of Ophthalmology & Visual Sciences; Professor, Pediatrics; Professor, Cell Biology, Neurobiology and Anatomy

Isabelle Banke, BS
Clinical Research Coordinator II

Kailey Frank, BS
Research Technologist II

Megan Fischer
G2 Student

Justin Freestone
Graduate Student

Gary Gardner
Research Technologist I

Linda Reis, MS, LCGC
Program Manager; Adjunct Instructor

Maria R. Replogle, PhD
Research Scientist I

Sarah Seese, PhD
Research Scientist I

Elena A. Sorokina, MS
Research Scientist I

Samuel Thompson
Research Technologist III
Get Involved
Support the Genomics, Genetics, and Epigenetics (GGE) Laboratory
The GGE Laboratory could not exist without the generosity and support of federal agencies and individual donors. Funds donated to the program are used to acquire new equipment and research consumables, to provide clinically confirmed results back to participants, to enable the presentation of our research findings at scientific meetings and to fund positions for support staff. Please contact SeminaGenetics@mcw.edu with have any questions. If you are interested in supporting our program at any level please click below, select “Other” from the drop-down menu and indicate ‘Elena Semina’ to donate securely online.
Donate to the GGE Lab

Join our studies
Enrollment in our studies is open to individuals affected with relevant conditions living in the United States or Canada. We are able to enroll in-person or remotely via a phone/Zoom call with samples collected at home.Genetic Studies of Human Ocular Disorders
Developmental Genomics Program
Feedback From Our Families
Having a confirmed diagnosis has been wonderful. I can say this is what my child has and this is how we can help him.
GGE Lab Study Participant
"Very appreciative to have been included. Also, very happy with the professionalism of the staff of researchers and the quick and personal responses"
GGE Lab Study Participant
"Relief. While the number of individuals identified with this syndrome is incredibly small, the characteristics or potential other issues are minimal. The nagging worry that something may be seriously wrong and just was not identified yet is gone."
GGE Lab Study Participant
"I am happy our genetic cause has been identified so now more families can be helped."
GGE Lab Study Participant
Recent Publications
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Displacement of distant regulatory elements of FOXC1 as a potential human disease mechanism.
(Ferre-Fernández JJ, Reis LM, Semina EV.) Hum Genomics. 2025 Mar 29;19(1):33 PMID: 40158102 PMCID: PMC11954209 SCOPUS ID: 2-s2.0-105001442057 03/30/2025
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Further Evidence for a Possible Role for ZFHX4 in Human Ocular Development and Disease.
(Reis LM, Zaidman GW, Thompson S, Muheisen S, Glaser T, Semina EV.) Am J Med Genet A. 2025 Mar;197(3):e63911 PMID: 39450701 PMCID: PMC11821440 SCOPUS ID: 2-s2.0-85207538260 10/25/2024
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(Merepa SS, Reis LM, Damián A, Bardakjian T, Schneider A, Trujillo-Tiebas MJ, Ayuso C, Galarza LC, Saez Villaverde R, Ortiz-Cabrera NV, Bax DA, Holt R, Ceroni F, Edery P, Grelet M, Riccardi F, Maillard L, Costakos D, Plaisancié J, Chassaing N, Corton M, Semina EV, Ragge NK.) European Journal of Human Genetics. 2025 SCOPUS ID: 2-s2.0-105003803205 01/01/2025
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Novel Intragenic and Genomic Variants Highlight the Phenotypic Variability in HCCS-Related Disease.
(Reis LM, Basel D, Bitoun P, Walton DS, Glaser T, Semina EV.) Genes (Basel). 2024 Dec 20;15(12) PMID: 39766903 PMCID: PMC11675438 SCOPUS ID: 2-s2.0-85213270754 01/08/2025
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(Ceroni F, Cicekdal MB, Holt R, Sorokina E, Chassaing N, Clokie S, Naert T, Talbot LV, Muheisen S, Bax DA, Kesim Y, Kivuva EC, Vincent-Delorme C, Lienkamp SS, Plaisancié J, De Baere E, Calvas P, Vleminckx K, Semina EV, Ragge NK.) Nat Commun. 2024 Oct 26;15(1):9245 PMID: 39455595 PMCID: PMC11511899 SCOPUS ID: 2-s2.0-85207625328 10/26/2024
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(Reis LM, Seese SE, Costakos D, Semina EV.) Prog Retin Eye Res. 2024 Sep;102:101288 PMID: 39097141 PMCID: PMC11392650 SCOPUS ID: 2-s2.0-85200800135 08/04/2024
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(Farris J, Khanna C, Smadbeck JB, Johnson SH, Bothun E, Kaplan T, Hoffman F, Polonis K, Oliver G, Reis LM, Semina EV, Rust L, Hoppman NL, Vasmatzis G, Marcou CA, Schimmenti LA, Klee EW.) Am J Med Genet A. 2024 May;194(5):e63542 PMID: 38234180 PMCID: PMC11003841 SCOPUS ID: 2-s2.0-85182427833 01/18/2024
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In Vivo Assessment of Retinal Phenotypes in Axenfeld-Rieger Syndrome.
(Untaroiu A, Reis LM, Higgins BP, Walesa A, Zacharias S, Nikezic D, Costakos DM, Carroll J, Semina EV.) Invest Ophthalmol Vis Sci. 2024 Apr 01;65(4):20 PMID: 38587439 PMCID: PMC11005067 SCOPUS ID: 2-s2.0-85190399640 04/08/2024
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Novel Intragenic and Genomic Variants Highlight the Phenotypic Variability in HCCS-Related Disease
(.) . 12/20/2024
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(Replogle MR, Thompson S, Reis LM, Semina EV.) Hum Mutat. 2024;2024 PMID: 39450403 PMCID: PMC11501074 SCOPUS ID: 2-s2.0-85185155859 10/25/2024
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(Farris J, Khanna C, Smadbeck JB, Johnson SH, Bothun E, Kaplan T, Hoffman F, Polonis K, Oliver G, Reis LM, Semina EV, Rust L, Hoppman NL, Vasmatzis G, Marcou CA, Schimmenti LA, Klee EW.) American Journal of Medical Genetics Part A. May 2024;194(5) SCOPUS ID: 2-s2.0-85182427833 05/01/2024
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(Replogle MR, Thompson S, Reis LM, Semina EV.) Human Mutation. 2024;2024 SCOPUS ID: 2-s2.0-85185155859 01/01/2024
Contact Us
Genomics, Genetics, and Epigenetics (GGE) Laboratory
(414) 955-7645
seminagenetics@mcw.edu